Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiLC
NA
NA

Attributes by original data submitter

Sample

source_name
Mnase-dY-EtOH-K4me1
strain background
C57BL/6
genotype/variation
Foxd3 conditional knockout
cell type
EpiC (dY cells)
cell line of origin
epiblast cells: EpiC (dY cells)
treatment
-Lif -2i day 3
chip antibody
H3K4me1
chip antibody vendor
Abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted using a standard ChIP protocol Library was constructed using a standard Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
27335624
Reads aligned (%)
92.9
Duplicates removed (%)
38.7
Number of peaks
1539 (qval < 1E-05)

mm9

Number of total reads
27335624
Reads aligned (%)
92.8
Duplicates removed (%)
38.8
Number of peaks
1558 (qval < 1E-05)

Base call quality data from DBCLS SRA