Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Breast cancer cell line
cell line
T47D-MTVL
treatment
stimulated cells with 60 minutes
chip-antibody
H2A; Kindly obtained from Stephan Dmitrov

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
172755094
Reads aligned (%)
96.8
Duplicates removed (%)
6.3
Number of peaks
3866 (qval < 1E-05)

hg19

Number of total reads
172755094
Reads aligned (%)
95.8
Duplicates removed (%)
8.4
Number of peaks
2365 (qval < 1E-05)

Base call quality data from DBCLS SRA