Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PPARG

Cell type

Cell type Class
Adipocyte
Cell type
White adipose tissue
NA
NA

Attributes by original data submitter

Sample

source_name
RS_072
experiment type
PPARG ChIP-seq
tissue
SQ White Adipose Tissue
chip antibody
anti-PPAR? antibody
chip antibody vendor
Santa Cruz Biotechnologies

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
38214714
Reads aligned (%)
98.4
Duplicates removed (%)
32.4
Number of peaks
2314 (qval < 1E-05)

hg19

Number of total reads
38214714
Reads aligned (%)
97.7
Duplicates removed (%)
33.2
Number of peaks
2085 (qval < 1E-05)

Base call quality data from DBCLS SRA