Antigen

Antigen Class

TFs and others

Antigen

MDM2

Cell type

Cell type Class

Lung

Cell type

NCI-H1299

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma Non-Small Cell

Sample

source_name

H1299

sample type

Mdm2 ChIP

tissue

lung carcinoma

cell type

H1299

chip antibody

anti-Mdm2 N20 (Santa Cruz, catalog# sc-813, lot# JO412)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Input and immunoprecipitated DNA were purified and prepared for Illumina sequencing following their standard protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

16697628

Reads aligned (%)

95.5

Duplicates removed (%)

3.7

Number of peaks

607 (qval < 1E-05)

hg19

Number of total reads

16697628

Reads aligned (%)

94.5

Duplicates removed (%)

4.9

Number of peaks

830 (qval < 1E-05)