SRX8201618
GSM4504721: CON input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
KGN
Primary Tissue
Ovary
Tissue Diagnosis
Tumor Granulosa Cell

Attributes by original data submitter

Sample

source_name
human ovarian granulosa KGN cells
cell line
KGN
cell type
Ovarian granulosa cells
passages
5-8
treatment
Control
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
We used ChIP-seq kit (CST, Cat# 9003) to extract chromatins following the manufacturer instructions. Libraries were prepared according to Illumina's protocols. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
86830964
Reads aligned (%)
96.8
Duplicates removed (%)
18.3
Number of peaks
1764 (qval < 1E-05)

hg19

Number of total reads
86830964
Reads aligned (%)
96.0
Duplicates removed (%)
19.4
Number of peaks
622 (qval < 1E-05)

Base call quality data from DBCLS SRA