SRX8167522
T cell ChIP H3K9me3 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

isolate
CD4+/CD8+ T-cells purified from PBMCs of a deidentified health donor
age
unknwon
biomaterial_provider
Shengdar Tsai, St Jude Children's Research Hospital, Memphis-TN
sex
male
tissue
Blood
cell_line
Human primary CD4/CD8 T cells
antibody
H3K9me3_rep1

Sequenced DNA Library

library_name
T_cell_ChIP_H3K9me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25133222
Reads aligned (%)
98.2
Duplicates removed (%)
5.1
Number of peaks
1603 (qval < 1E-05)

hg19

Number of total reads
25133222
Reads aligned (%)
96.8
Duplicates removed (%)
7.4
Number of peaks
1426 (qval < 1E-05)

Base call quality data from DBCLS SRA