SRX8167521
T cell ChIP H3K4me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

isolate
CD4+/CD8+ T-cells purified from PBMCs of a deidentified health donor
age
unknwon
biomaterial_provider
Shengdar Tsai, St Jude Children's Research Hospital, Memphis-TN
sex
male
tissue
Blood
cell_line
Human primary CD4/CD8 T cells
antibody
H3K4me3_rep2

Sequenced DNA Library

library_name
T_cell_ChIP_H3K4me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35388992
Reads aligned (%)
98.5
Duplicates removed (%)
7.2
Number of peaks
27066 (qval < 1E-05)

hg19

Number of total reads
35388992
Reads aligned (%)
97.8
Duplicates removed (%)
8.0
Number of peaks
26905 (qval < 1E-05)

Base call quality data from DBCLS SRA