SRX8167518
T cell ChIP input rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

isolate
CD4+/CD8+ T-cells purified from PBMCs of a deidentified health donor
age
unknwon
biomaterial_provider
Shengdar Tsai, St Jude Children's Research Hospital, Memphis-TN
sex
male
tissue
Blood
cell_line
Human primary CD4/CD8 T cells
antibody
input_rep1

Sequenced DNA Library

library_name
T_cell_ChIP_input_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19541210
Reads aligned (%)
98.0
Duplicates removed (%)
4.8
Number of peaks
643 (qval < 1E-05)

hg19

Number of total reads
19541210
Reads aligned (%)
97.2
Duplicates removed (%)
5.6
Number of peaks
764 (qval < 1E-05)

Base call quality data from DBCLS SRA