SRX8156232
GSM4490688: S2 HA-ZKSCAN4 ChIP Input genomic DNA; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2-HA::ZKSCAN4 Cell line
developmental stage
late embryo-derived cell line stably transfected with HA::ZKSCAN4
tissue
S2-DRSC-HA::ZKSCAN4 cell line
treatment
10 microMolar Cu2SO4
genotype
HA::ZKSCAN4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was extracted with Qiagen Rneasy kit; Chromatin was prepared according to the modENCODE procedure DNA and mRNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
20381265
Reads aligned (%)
96.1
Duplicates removed (%)
22.8
Number of peaks
14648 (qval < 1E-05)

dm3

Number of total reads
20381265
Reads aligned (%)
96.5
Duplicates removed (%)
22.1
Number of peaks
15253 (qval < 1E-05)

Base call quality data from DBCLS SRA