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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: CD34 Hematopoietic stem cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX813530
ChIP-seq EPP H3K4me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA
Attributes by original data submitter
Sample
isolate
Ficoll and FACS isolation
age
missing
biomaterial_provider
missing
sex
missing
tissue
Human umbilical cord blood
cell_type
CD34+-derived human erythroid progenitors/precursors
sample_type
chipseq2
Sequenced DNA Library
library_name
ChIP-seq_EPP_H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
35645050
Reads aligned (%)
94.0
Duplicates removed (%)
24.9
Number of peaks
40748 (qval < 1E-05)
hg19
Number of total reads
35645050
Reads aligned (%)
93.8
Duplicates removed (%)
25.3
Number of peaks
40738 (qval < 1E-05)
Base call quality data from
DBCLS SRA