Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU2F1

Cell type

Cell type Class
Breast
Cell type
Mammary gland ductal carcinoma
NA
NA

Attributes by original data submitter

Sample

source_name
mammary gland ductal carcinoma
parental cell line
T-47D
esr1 genotype
D538G
treatment
None
chip antibody
Anti-OCT1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
25128986
Reads aligned (%)
81.1
Duplicates removed (%)
9.0
Number of peaks
16210 (qval < 1E-05)

hg38

Number of total reads
25128986
Reads aligned (%)
83.4
Duplicates removed (%)
7.4
Number of peaks
16346 (qval < 1E-05)

Base call quality data from DBCLS SRA