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BigWig
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Peak-call (q < 1E-10)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: MEF
ATCC
MeSH
RIKEN BRC
SRX796324
GSM1558594: Input Chip seq in MEF Hmga2 Ko; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast
Attributes by original data submitter
Sample
source_name
Mouse Embryonic Fibroblast (MEF)
cells
Mouse Embryonic Fibroblast (MEF)
embryo stage
E15.5
passages
2_to_4
strain
C57BL/6
genotype/variation
Hmga2 Ko
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated chromatin and Protein-DNA complexes were isolated with the antibody. Libraries were prepared according to Illumina's instructions accompanying the Ovation Ultra Low Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
45269705
Reads aligned (%)
97.3
Duplicates removed (%)
13.6
Number of peaks
326 (qval < 1E-05)
mm9
Number of total reads
45269705
Reads aligned (%)
97.1
Duplicates removed (%)
13.6
Number of peaks
289 (qval < 1E-05)
Base call quality data from
DBCLS SRA