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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: BCBL1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7918800
GSM4414003: Latent H3K27ac ChIPseq-set2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
BCBL1
NA
NA
Attributes by original data submitter
Sample
source_name
TRExBCBL1-RTA
cell line
TRExBCBL1-RTA
infection
KSHV
replication
Latent
chip antibody
rabbit anti-H3K27ac (Active Motif 39133 lot# 28518012)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with 1% formaldehyde and total nuclei was extracted KAPA HyperPrep kit
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
35920126
Reads aligned (%)
96.3
Duplicates removed (%)
4.0
Number of peaks
34883 (qval < 1E-05)
hg19
Number of total reads
35920126
Reads aligned (%)
95.8
Duplicates removed (%)
4.9
Number of peaks
34476 (qval < 1E-05)
Base call quality data from
DBCLS SRA