SRX7918798
GSM4414001: Latent H3K27ac ChIPseq-set1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
TRExBCBL1-RTA
cell line
TRExBCBL1-RTA
infection
KSHV
replication
Latent
chip antibody
rabbit anti-H3K27ac (Active Motif 39133 lot# 28518012)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with 1% formaldehyde and total nuclei was extracted KAPA HyperPrep kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26174769
Reads aligned (%)
96.8
Duplicates removed (%)
7.9
Number of peaks
36613 (qval < 1E-05)

hg19

Number of total reads
26174769
Reads aligned (%)
96.3
Duplicates removed (%)
8.6
Number of peaks
36140 (qval < 1E-05)

Base call quality data from DBCLS SRA