Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Nucleus Accumbens
MeSH Description
Collection of pleomorphic cells in the caudal part of the anterior horn of the LATERAL VENTRICLE, in the region of the OLFACTORY TUBERCLE, lying between the head of the CAUDATE NUCLEUS and the ANTERIOR PERFORATED SUBSTANCE. It is part of the so-called VENTRAL STRIATUM, a composite structure considered part of the BASAL GANGLIA.

Attributes by original data submitter

Sample

source_name
mouse saline NAc ChIP input
tissue
nucleus accumbens
chip antibody
input
strategy
ChIP-seq
treatment
Saline
strain
C57BL/6

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
following regulation qiagen kit protocol for RNA/DNA isolation following illumina kit protocol for library prep

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
201196300
Reads aligned (%)
99.6
Duplicates removed (%)
0.0
Number of peaks
138 (qval < 1E-05)

mm9

Number of total reads
201196300
Reads aligned (%)
99.6
Duplicates removed (%)
0.0
Number of peaks
126 (qval < 1E-05)

Base call quality data from DBCLS SRA