Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YBX1

Cell type

Cell type Class
Blood
Cell type
HEL
Primary Tissue
Blood
Tissue Diagnosis
Erythroleukemia

Attributes by original data submitter

Sample

source_name
HEL cultured cell line
cell line
HEL
chip target
YBX1
antibody
anti-YBX1 (Abcam, EP2708Y, #ab76149)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
20635665
Reads aligned (%)
101.2
Duplicates removed (%)
47.4
Number of peaks
6813 (qval < 1E-05)

hg38

Number of total reads
20635665
Reads aligned (%)
103.3
Duplicates removed (%)
46.8
Number of peaks
6491 (qval < 1E-05)

Base call quality data from DBCLS SRA