SRX7885785
GSM4404352: Input NT shRNA H9 hESCs (replicate 1)[Input NT 1]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs (WA09)
shRNA
H9 hESCs expressing NT shRNA as a control to compare with UBE2K shRNA-treated cells
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina ChIP Seq library Protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21677822
Reads aligned (%)
98.4
Duplicates removed (%)
9.1
Number of peaks
375 (qval < 1E-05)

hg19

Number of total reads
21677822
Reads aligned (%)
98.0
Duplicates removed (%)
9.7
Number of peaks
573 (qval < 1E-05)

Base call quality data from DBCLS SRA