Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs (WA09)
shRNA
H9 hESCs expressing NT shRNA as a control to compare with UBE2K shRNA-treated cells
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina ChIP Seq library Protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
26956333
Reads aligned (%)
98.2
Duplicates removed (%)
8.8
Number of peaks
491 (qval < 1E-05)

hg19

Number of total reads
26956333
Reads aligned (%)
97.6
Duplicates removed (%)
8.9
Number of peaks
284 (qval < 1E-05)

Base call quality data from DBCLS SRA