SRX7885779
GSM4404346: Input UBE2K shRNA H9 hESCs (replicate 1)[Input Ube1]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
H9 hESCs (WA09)
shRNA
H9 hESCs expressing UBE2K shRNA to silence the expression of UBE2K
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Illumina ChIP Seq library Protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28951490
Reads aligned (%)
92.1
Duplicates removed (%)
9.8
Number of peaks
408 (qval < 1E-05)

hg19

Number of total reads
28951490
Reads aligned (%)
91.7
Duplicates removed (%)
9.9
Number of peaks
275 (qval < 1E-05)

Base call quality data from DBCLS SRA