Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

MDA-MB-231

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MDA-MB-231

cell line

breast cancer cell line MDA-MB-231

er/pr/her2 statue

triple negative – ER-; PR-; HER2-

chip antibody

input

bet inhibitor jq1 treatment

inactive enantiomer JQ1, i.e. JQ1_neg or JQ1(-)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated by IP with anti-BRD4-L or BRD4-S [i.e., S(a)] antibody or with Abcam EN1 antibody (Cat# ab108598). Sequencing libraries were constructed using NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB) following manufacturer's protocol.

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

49038288

Reads aligned (%)

98.2

Duplicates removed (%)

3.1

Number of peaks

1285 (qval < 1E-05)

hg19

Number of total reads

49038288

Reads aligned (%)

97.5

Duplicates removed (%)

4.6

Number of peaks

1092 (qval < 1E-05)