Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ERα proliferating FEN1 inhibitor
cell line
MCF-7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP experiments were performed as described previously (Zwart et al., 2011). ChIP DNA was amplified as described (Jansen et al., 2013). Sequences were generated by theHiSeq 2500 High Output Mode, and aligned to the Human Reference Genome (assembly hg19, February 2009).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
20017342
Reads aligned (%)
94.7
Duplicates removed (%)
2.6
Number of peaks
2331 (qval < 1E-05)

hg38

Number of total reads
20017342
Reads aligned (%)
96.8
Duplicates removed (%)
1.3
Number of peaks
2282 (qval < 1E-05)

Base call quality data from DBCLS SRA