SRX7749563
GSM4320339: dCas9-KRAB sgTGFB1 B9D2 input rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary

Attributes by original data submitter

Sample

source_name
H441
cell type
lung papillary adenocarcinoma cells
cell line
H441
chip antibody
none
genotype
dCas9-KRAB_sgTGFB1_B9D2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using a ChIP kit (cat# 9003; Cell Signaling Technology). Library was constructed at CCHMC DNA Sequencing and Genotyping Core.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32595654
Reads aligned (%)
97.9
Duplicates removed (%)
14.3
Number of peaks
567 (qval < 1E-05)

hg19

Number of total reads
32595654
Reads aligned (%)
97.3
Duplicates removed (%)
14.7
Number of peaks
287 (qval < 1E-05)

Base call quality data from DBCLS SRA