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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: NCI-H441
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7749562
GSM4320338: dCas9-KRAB sgTGFB1 B9D2 input rep1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Lung
Cell type
NCI-H441
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma Papillary
Attributes by original data submitter
Sample
source_name
H441
cell type
lung papillary adenocarcinoma cells
cell line
H441
chip antibody
none
genotype
dCas9-KRAB_sgTGFB1_B9D2
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed using a ChIP kit (cat# 9003; Cell Signaling Technology). Library was constructed at CCHMC DNA Sequencing and Genotyping Core.
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
53146852
Reads aligned (%)
94.7
Duplicates removed (%)
24.8
Number of peaks
596 (qval < 1E-05)
hg19
Number of total reads
53146852
Reads aligned (%)
94.2
Duplicates removed (%)
25.1
Number of peaks
272 (qval < 1E-05)
Base call quality data from
DBCLS SRA