Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
BEAS-2B
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
Bronchial epithelial cells
tissue
lung, bronchus
disease
Normal
genotype
WT
cell line
BEAS-2B
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Eight million WT and KO BEAS-2B cells were fixed and subjected to immunoprecipitation using ChIP-grade antibodies against H3K4me3 (Active Motif Cat# 39159), H3K9me3 (Active Motif Cat# 39161), H3K27me3 (Active Motif cat #39155) and H3R8me2a (Active Motif cat #39651). ChIP and input/control DNA were prepared for sequencing using Illumina NextSeq 500. Libraries were generated using Next Gen DNA library kit (active motif #53216)

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
34099544
Reads aligned (%)
94.6
Duplicates removed (%)
5.9
Number of peaks
1408 (qval < 1E-05)

hg19

Number of total reads
34099544
Reads aligned (%)
93.7
Duplicates removed (%)
7.3
Number of peaks
1145 (qval < 1E-05)

Base call quality data from DBCLS SRA