Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
ChIPseq_INPUT_from_MTF2_SH4
cell line
DU145
cell type
Human prostate cancer cell line
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin preparation and ChIP experiments were performed with the ChIP-IT High Sensitivity Kit from Active Motif (#53040) according to the manufacturer's instructions. Libraries were prepared according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
50972016
Reads aligned (%)
98.8
Duplicates removed (%)
7.1
Number of peaks
1191 (qval < 1E-05)

hg19

Number of total reads
50972016
Reads aligned (%)
98.1
Duplicates removed (%)
8.7
Number of peaks
1254 (qval < 1E-05)

Base call quality data from DBCLS SRA