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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MTF2
wikigenes
PDBj
CellType: DU 145
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7654177
GSM4291156: ChIPseq MTF2 SH4 R2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MTF2
Cell type
Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
ChIPseq_MTF2_SH4
cell line
DU145
cell type
Human prostate cancer cell line
chip antibody
MTF2 (Proteintech 16208-1-AP) / Drosophila H2Av (Active Motif #61686).
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin preparation and ChIP experiments were performed with the ChIP-IT High Sensitivity Kit from Active Motif (#53040) according to the manufacturer's instructions. Libraries were prepared according to Illumina instructions.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
46969358
Reads aligned (%)
93.3
Duplicates removed (%)
10.0
Number of peaks
6328 (qval < 1E-05)
hg19
Number of total reads
46969358
Reads aligned (%)
92.8
Duplicates removed (%)
11.1
Number of peaks
6327 (qval < 1E-05)
Base call quality data from
DBCLS SRA