Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF19

Cell type

Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
ChIPseq_PHF19_SH4
cell line
DU145
cell type
Human prostate cancer cell line
chip antibody
PHF19 (Cell Signaling #77271) / Drosophila H2Av (Active Motif #61686).

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin preparation and ChIP experiments were performed with the ChIP-IT High Sensitivity Kit from Active Motif (#53040) according to the manufacturer's instructions. Libraries were prepared according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
45725105
Reads aligned (%)
58.6
Duplicates removed (%)
26.0
Number of peaks
1578 (qval < 1E-05)

hg38

Number of total reads
45725105
Reads aligned (%)
60.0
Duplicates removed (%)
24.7
Number of peaks
1447 (qval < 1E-05)

Base call quality data from DBCLS SRA