SRX764228
GSM1550776: Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14
chip antibody
none
cell line
E14

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using antibodies for Flag, C17orf96, H3K4me3 or H3K27me3 Libraries were constructed of 10 ng of ChIP DNA following Illumina’s® protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20346317
Reads aligned (%)
93.9
Duplicates removed (%)
45.9
Number of peaks
425 (qval < 1E-05)

mm9

Number of total reads
20346317
Reads aligned (%)
93.7
Duplicates removed (%)
46.0
Number of peaks
557 (qval < 1E-05)

Base call quality data from DBCLS SRA