Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JMJD1C

Cell type

Cell type Class
Blood
Cell type
Kasumi-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
Kasumi-1_JMJMJC1C
cell line
Kasumi-1
cell type
myeloblast
disease
acute myeloblastic leukemia
chip antibody
anti-JMJD1C serum

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from crosslinked and sonicated cells and JMJD1C-DNA complexes were isolated with antibody. The antibody was home-made and hasn't been published yet. The antigen used for this antibody generation is the N-terminus of JMJD1C protein. Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
31077918
Reads aligned (%)
64.3
Duplicates removed (%)
32.1
Number of peaks
15018 (qval < 1E-05)

hg38

Number of total reads
31077918
Reads aligned (%)
66.2
Duplicates removed (%)
30.6
Number of peaks
14942 (qval < 1E-05)

Base call quality data from DBCLS SRA