Antigen

Antigen Class

TFs and others

Antigen

JMJD1C

Cell type

Cell type Class

Blood

Cell type

Kasumi-1

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Acute Myelogenous

Sample

source_name

Kasumi-1_JMJMJC1C

cell line

Kasumi-1

cell type

myeloblast

disease

acute myeloblastic leukemia

chip antibody

anti-JMJD1C serum

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from crosslinked and sonicated cells and JMJD1C-DNA complexes were isolated with antibody. The antibody was home-made and hasn't been published yet. The antigen used for this antibody generation is the N-terminus of JMJD1C protein. Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg19

Number of total reads

31077918

Reads aligned (%)

64.3

Duplicates removed (%)

32.1

Number of peaks

15018 (qval < 1E-05)

hg38

Number of total reads

31077918

Reads aligned (%)

66.2

Duplicates removed (%)

30.6

Number of peaks

14942 (qval < 1E-05)