Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H3122
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Cancer Cell Line
evolved resistance in
pooled samples
cell line
H3122
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
H3122 cells were fixed with 1% formaldehyde for 15 min and quenched with 0.125 M glycine. Chromatin was isolated by the addition of lysis buffer, followed by disruption with a Dounce homogenizer. Lysates were sonicated and the DNA sheared to an average length of 300-500 bp. Genomic DNA (Input) was prepared by treating aliquots of chromatin with RNase, proteinase K and heat for de-crosslinking, followed by ethanol precipitation. Pellets were resuspended and the resulting DNA was quantified on a NanoDrop spectrophotometer. Extrapolation to the original chromatin volume allowed quantitation of the total chromatin yield.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
42551633
Reads aligned (%)
95.6
Duplicates removed (%)
8.5
Number of peaks
1792 (qval < 1E-05)

hg19

Number of total reads
42551633
Reads aligned (%)
94.9
Duplicates removed (%)
10.0
Number of peaks
1459 (qval < 1E-05)

Base call quality data from DBCLS SRA