Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Adult
Cell type
Whole worm
NA
NA

Attributes by original data submitter

Sample

source_name
whole animal
cell type
whole animal
passages
ND
strain
Bristol
chip antibody
FLAG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Animal lysates were prepared following the protocol of Berkseth et al., 2013. Libraries were prepared with the kapa hyper prep kit.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

ce11

Number of total reads
29918182
Reads aligned (%)
47.5
Duplicates removed (%)
14.9
Number of peaks
915 (qval < 1E-05)

ce10

Number of total reads
29918182
Reads aligned (%)
47.5
Duplicates removed (%)
14.9
Number of peaks
915 (qval < 1E-05)

Base call quality data from DBCLS SRA