Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For ce11
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For ce10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For ce11
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For ce10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Epitope tags
wikigenes
PDBj
CellType: Whole worm
ATCC
MeSH
RIKEN BRC
SRX7627594
GSM4283791: FLAG ChIPSeq; Caenorhabditis elegans; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Epitope tags
Cell type
Cell type Class
Adult
Cell type
Whole worm
NA
NA
Attributes by original data submitter
Sample
source_name
whole animal
cell type
whole animal
passages
ND
strain
Bristol
chip antibody
FLAG
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Animal lysates were prepared following the protocol of Berkseth et al., 2013. Libraries were prepared with the kapa hyper prep kit.
Sequencing Platform
instrument_model
Illumina HiSeq 3000
Where can I get the processing logs?
Read processing pipeline
log
ce11
Number of total reads
29918182
Reads aligned (%)
47.5
Duplicates removed (%)
14.9
Number of peaks
915 (qval < 1E-05)
ce10
Number of total reads
29918182
Reads aligned (%)
47.5
Duplicates removed (%)
14.9
Number of peaks
915 (qval < 1E-05)
Base call quality data from
DBCLS SRA