SRX7627553
GSM4283786: germline LAG-1 ChIPseq rep3; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
lag-1

Cell type

Cell type Class
Larvae
Cell type
Germline cells
NA
NA

Attributes by original data submitter

Sample

source_name
germline
cell type
germline
passages
ND
strain
Bristol
chip antibody
LAG-1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Animal lysates were prepared following the protocol of Berkseth et al., 201.3 Libraries were prepared with the kapa hyper prep kit.

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
3682205
Reads aligned (%)
89.7
Duplicates removed (%)
67.0
Number of peaks
469 (qval < 1E-05)

ce10

Number of total reads
3682205
Reads aligned (%)
89.7
Duplicates removed (%)
67.0
Number of peaks
470 (qval < 1E-05)

Base call quality data from DBCLS SRA