SRX7624391
GSM4282181: total input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 human embryonic stem cells (WA01), p75
tissue
H1 human embryonic stem cells (WA01), p75
culture
mTESRI, matrigel
chip ab
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Turelli et al., 2014

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
73653188
Reads aligned (%)
96.4
Duplicates removed (%)
8.5
Number of peaks
30802 (qval < 1E-05)

hg19

Number of total reads
73653188
Reads aligned (%)
95.9
Duplicates removed (%)
9.4
Number of peaks
30236 (qval < 1E-05)

Base call quality data from DBCLS SRA