Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

isolate
isolated from a 54 years female
age
54
biomaterial_provider
University of Debrecen, Ivan Uray
sex
female
tissue
mammary gland, breast
cell_line
T47D
cell_type
breast adenocarcinoma cells
treatment
none
replicate
none
antibody
none

Sequenced DNA Library

library_name
hs_T47D_INPUT_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
19695143
Reads aligned (%)
97.3
Duplicates removed (%)
4.4
Number of peaks
679 (qval < 1E-05)

hg19

Number of total reads
19695143
Reads aligned (%)
96.7
Duplicates removed (%)
5.9
Number of peaks
668 (qval < 1E-05)

Base call quality data from DBCLS SRA