SRX7624162
ER alpha ChIP-Seq of T47D breast cancer cells replicate 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

isolate
isolated from a 54 years female
age
54
biomaterial_provider
University of Debrecen, Ivan Uray
sex
female
tissue
mammary gland, breast
cell_line
T47D
cell_type
breast adenocarcinoma cells
treatment
none
replicate
biological replicate 2
antibody
ER alpha

Sequenced DNA Library

library_name
hs_T47D_ESR1_ChIPseq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25113717
Reads aligned (%)
95.1
Duplicates removed (%)
18.9
Number of peaks
32867 (qval < 1E-05)

hg19

Number of total reads
25113717
Reads aligned (%)
94.5
Duplicates removed (%)
19.8
Number of peaks
32748 (qval < 1E-05)

Base call quality data from DBCLS SRA