SRX7624158
INPUT ChIP-Seq of MCF-7 breast cancer cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
isolated from a 69 years female
age
69
biomaterial_provider
Sigma Aldrich
sex
female
tissue
mammary gland, breast
cell_line
MCF-7
cell_type
breast adenocarcinoma cells
treatment
none
replicate
none
antibody
none

Sequenced DNA Library

library_name
hs_MCF7_INPUT_ChIPseq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28691137
Reads aligned (%)
97.0
Duplicates removed (%)
3.8
Number of peaks
640 (qval < 1E-05)

hg19

Number of total reads
28691137
Reads aligned (%)
96.4
Duplicates removed (%)
5.4
Number of peaks
669 (qval < 1E-05)

Base call quality data from DBCLS SRA