SRX7624157
ER alpha ChIP-Seq of MCF-7 breast cancer cells replicate 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
isolated from a 69 years female
age
69
biomaterial_provider
Sigma Aldrich
sex
female
tissue
mammary gland, breast
cell_line
MCF-7
cell_type
breast adenocarcinoma cells
treatment
none
replicate
biological replicate 2
antibody
ER alpha

Sequenced DNA Library

library_name
hs_MCF7_ESR1_ChIPseq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
56133221
Reads aligned (%)
96.3
Duplicates removed (%)
24.8
Number of peaks
100966 (qval < 1E-05)

hg19

Number of total reads
56133221
Reads aligned (%)
95.9
Duplicates removed (%)
25.5
Number of peaks
100685 (qval < 1E-05)

Base call quality data from DBCLS SRA