SRX7624147
NR2F2 ChIP-Seq of MCF-7 breast cancer cells replicate 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2F2

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
isolated from a 69 years female
age
69
biomaterial_provider
Sigma Aldrich
sex
female
tissue
mammary gland, breast
cell_line
MCF-7
cell_type
breast adenocarcinoma cells
treatment
none
replicate
biological replicate 2
antibody
NR2F2 (ARP-1)

Sequenced DNA Library

library_name
hs_MCF7_NR2F2_ChIPseq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23995581
Reads aligned (%)
72.1
Duplicates removed (%)
44.4
Number of peaks
9861 (qval < 1E-05)

hg19

Number of total reads
23995581
Reads aligned (%)
71.6
Duplicates removed (%)
45.6
Number of peaks
9830 (qval < 1E-05)

Base call quality data from DBCLS SRA