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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NR2F2
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7624146
NR2F2 ChIP-Seq of MCF-7 breast cancer cells replicate 1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NR2F2
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
isolate
isolated from a 69 years female
age
69
biomaterial_provider
Sigma Aldrich
sex
female
tissue
mammary gland, breast
cell_line
MCF-7
cell_type
breast adenocarcinoma cells
treatment
none
replicate
biological replicate 1
antibody
NR2F2 (ARP-1)
Sequenced DNA Library
library_name
hs_MCF7_NR2F2_ChIPseq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21289010
Reads aligned (%)
68.5
Duplicates removed (%)
37.6
Number of peaks
11349 (qval < 1E-05)
hg19
Number of total reads
21289010
Reads aligned (%)
68.1
Duplicates removed (%)
38.6
Number of peaks
11352 (qval < 1E-05)
Base call quality data from
DBCLS SRA