SRX760026
GSM1545746: IgG EV ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
X18.1.1
NA
NA

Attributes by original data submitter

Sample

source_name
X18.1.1 AML cell line, empty vector, IgG ChIP
cell line
X18.1.1
cell type
AML cell line
transfection
empty vector
chip antibody
Rabbit IgG (Sigma I5006)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Illumina HiSeq 2000

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
23434297
Reads aligned (%)
78.4
Duplicates removed (%)
19.7
Number of peaks
424 (qval < 1E-05)

mm9

Number of total reads
23434297
Reads aligned (%)
78.3
Duplicates removed (%)
19.8
Number of peaks
422 (qval < 1E-05)

Base call quality data from DBCLS SRA