SRX760025
GSM1545745: IgG PuER ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
X18.1.1
NA
NA

Attributes by original data submitter

Sample

source_name
X18.1.1 AML cell line, PuER, IgG ChIP
cell line
X18.1.1
cell type
AML cell line
transfection
PuER
chip antibody
Rabbit IgG (Sigma I5006)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Illumina HiSeq 2000

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20242362
Reads aligned (%)
77.2
Duplicates removed (%)
34.1
Number of peaks
287 (qval < 1E-05)

mm9

Number of total reads
20242362
Reads aligned (%)
77.1
Duplicates removed (%)
34.2
Number of peaks
372 (qval < 1E-05)

Base call quality data from DBCLS SRA