Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Cebpa
wikigenes
PDBj
CellType: X18.1.1
ATCC
MeSH
RIKEN BRC
SRX760022
GSM1545742: CEBPA EV ChIPSeq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Cebpa
Cell type
Cell type Class
Blood
Cell type
X18.1.1
NA
NA
Attributes by original data submitter
Sample
source_name
X18.1.1 AML cell line, empty vector, CEBPA ChIP
cell line
X18.1.1
cell type
AML cell line
transfection
empty vector
chip antibody
CEBPA (Santa Cruz sc61x)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Illumina HiSeq 2000
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
25393542
Reads aligned (%)
86.2
Duplicates removed (%)
21.1
Number of peaks
31415 (qval < 1E-05)
mm9
Number of total reads
25393542
Reads aligned (%)
86.0
Duplicates removed (%)
21.1
Number of peaks
31444 (qval < 1E-05)
Base call quality data from
DBCLS SRA