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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Chondrocytes
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7587160
GSM4278206: Input Rep1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.
Attributes by original data submitter
Sample
source_name
Input
donor status
total knee replacement surgery patient
cell type
primary chondrocytes
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
FoxO1-DNA complexes were isolated with antibody. For library preparation, 10 ng of each sample was prepared using the NEB Ultra DNA Library Prep Kit for Illumina following manufacturer's instructions.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
29701333
Reads aligned (%)
97.9
Duplicates removed (%)
17.1
Number of peaks
1049 (qval < 1E-05)
hg19
Number of total reads
29701333
Reads aligned (%)
97.1
Duplicates removed (%)
18.6
Number of peaks
966 (qval < 1E-05)
Base call quality data from
DBCLS SRA