Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXO1

Cell type

Cell type Class
Bone
Cell type
Chondrocytes
MeSH Description
Polymorphic cells that form cartilage.

Attributes by original data submitter

Sample

source_name
FoxO1_ChIP-seq
donor status
total knee replacement surgery patient
cell type
primary chondrocytes
chip antibody
FoxO1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
FoxO1-DNA complexes were isolated with antibody. For library preparation, 10 ng of each sample was prepared using the NEB Ultra DNA Library Prep Kit for Illumina following manufacturer's instructions.

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
18540572
Reads aligned (%)
96.9
Duplicates removed (%)
14.3
Number of peaks
984 (qval < 1E-05)

hg38

Number of total reads
18540572
Reads aligned (%)
97.9
Duplicates removed (%)
12.6
Number of peaks
910 (qval < 1E-05)

Base call quality data from DBCLS SRA