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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATF4
wikigenes
PDBj
CellType: HUDEP-2
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7584812
GSM4277343: HUDEP2-ATF4-r2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ATF4
Cell type
Cell type Class
Blood
Cell type
HUDEP-2
NA
NA
Attributes by original data submitter
Sample
source_name
HUDEP2-ATF4
cell line
HUDEP2
tissue
Immortalized Human Erythroid Progenitor
cell type
Erythroid cells
differentiation
Undifferentiated
chip antibody
ATF4 (Cell Signaling Technology, 11815S, lot 4)
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
34607618
Reads aligned (%)
78.3
Duplicates removed (%)
17.7
Number of peaks
2351 (qval < 1E-05)
hg38
Number of total reads
34607618
Reads aligned (%)
81.0
Duplicates removed (%)
15.6
Number of peaks
2737 (qval < 1E-05)
Base call quality data from
DBCLS SRA