Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF4

Cell type

Cell type Class
Blood
Cell type
HUDEP-2
NA
NA

Attributes by original data submitter

Sample

source_name
HUDEP2-ATF4
cell line
HUDEP2
tissue
Immortalized Human Erythroid Progenitor
cell type
Erythroid cells
differentiation
Undifferentiated
chip antibody
ATF4 (Cell Signaling Technology, 11815S, lot 4)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
34607618
Reads aligned (%)
78.3
Duplicates removed (%)
17.7
Number of peaks
2351 (qval < 1E-05)

hg38

Number of total reads
34607618
Reads aligned (%)
81.0
Duplicates removed (%)
15.6
Number of peaks
2737 (qval < 1E-05)

Base call quality data from DBCLS SRA