SRX758134
GSM1543895: MM1.RL Ctrl GR; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Blood
Cell type
MM1.RL
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
MM1.RL
cell line
MM1.RL
treatment
Ctrl
chip antibody
GR

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Trizol ChIP-Seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
28833635
Reads aligned (%)
53.8
Duplicates removed (%)
31.5
Number of peaks
992 (qval < 1E-05)

hg38

Number of total reads
28833635
Reads aligned (%)
55.0
Duplicates removed (%)
30.8
Number of peaks
1115 (qval < 1E-05)

Base call quality data from DBCLS SRA