Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM1A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Fibroblast-derived iPSC
genotype
Control
donor
GDB-339-1
gender
female
chip antibody
KDM1A (Abcam AB17721)
flowcell id
D2BJHACXX

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
32795940
Reads aligned (%)
91.4
Duplicates removed (%)
15.8
Number of peaks
595 (qval < 1E-05)

hg19

Number of total reads
32795940
Reads aligned (%)
90.9
Duplicates removed (%)
16.3
Number of peaks
728 (qval < 1E-05)

Base call quality data from DBCLS SRA