Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GTF2I

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Fibroblast-derived iPSC
genotype
WBS
donor
GDB-306
gender
male
chip antibody
GTF2I (Bethyl A301-330A)
flowcell id
D2B9EACXX

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
41551556
Reads aligned (%)
75.4
Duplicates removed (%)
9.8
Number of peaks
36177 (qval < 1E-05)

hg38

Number of total reads
41551556
Reads aligned (%)
77.3
Duplicates removed (%)
8.3
Number of peaks
34310 (qval < 1E-05)

Base call quality data from DBCLS SRA