Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GTF2I

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
Fibroblast-derived iPSC
genotype
Control
donor
GDB-339-1
gender
female
chip antibody
GTF2I (Bethyl A301-330A)
flowcell id
C26CLACXX, C1ULAACXX

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
39153537
Reads aligned (%)
59.3
Duplicates removed (%)
34.9
Number of peaks
5153 (qval < 1E-05)

hg38

Number of total reads
39153537
Reads aligned (%)
61.0
Duplicates removed (%)
33.5
Number of peaks
5205 (qval < 1E-05)

Base call quality data from DBCLS SRA