Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

sample_type

tissue

tissue

testis

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

30106083

Reads aligned (%)

95.7

Duplicates removed (%)

4.2

Number of peaks

1131 (qval < 1E-05)

hg19

Number of total reads

30106083

Reads aligned (%)

95.0

Duplicates removed (%)

5.0

Number of peaks

1185 (qval < 1E-05)